I think in regards to heat soak, what most auto's (track racing) talk about is the heat soak that happens on things such as superchargers/turbos and their intercoolers. Especially if they are air-water-to-air types. I have one on my 92 Supercharged Miata running 12 psi. Heat soak is an issue, as the unit is only capable of removing a specific amount of btu's per min and when I race it, after about 15-20 mins, the unit water temp for the IC goes up dramatically to the point where the ECU will shut down the engine. Solved this with a water injection kit, but you get the point.
As for the bike, the flow of air doesnt have the time to heat up.
I don't know what sensors we have on the bike, most ECU will require engine temp as well and intake air temp (and velocity) to properly adjust the fuel map. If it doesnt (I would be surprised) then cold air induction wouldnt help as more air is only useful if the ECO can detect it and adjust the A/F ratio to take advantage of this. Thats why most cars require a retune after adding cold-air systems as the ECU can't adjust enough to compendate for the change. But again, I would be surprised if it didnt have an intake temp sensor.
As a person that has changed EVERYTHING to get more HP, from cams to superchargers to ECU, valves, headers... there is a cost for everything.
Factory engines are set for reliability and drivability 1st for foremost. Power usually comes after that and nowdays, even for bike, after emissions requirements!
So, there is room for improvment, but you will end up with a tradeoff. For me, I love the tune, that's a real reason why I picked it. Smooth low and mid power delivery, where I spend 95% of my time.